Polar Bear Day!

It’s polar bear day! This year, have some adorable photos of a curious exploring bear, or learn about Google mapping polar-bear turf.

Polar bears are threatened by habitat loss, climate change, and trophy hunting. They are way too vicious and charismatic to die out that way. Plus, the males embrace alternative culture by getting their lips tattooed for tracking.

Posted in Biology | Tagged , | Leave a comment

Detecting Porosity & Permeability

Effective porosity can be measured with electromagnetic induction probes. Hydraulic conductivity can be measured in-situ by observing water-level fluctuations in drill-holes. For a system at equilibrium, the system needs to be disturbed to produce fluid flow by either pumping water out and observing the recharge rate, or injecting a slug of water and observing how quickly it dissipates out of the hole.

The purpose and environmental conditions of the test will impact what method is most appropriate. If permeability is being measured as part of contamination monitoring and modelling, the pumping or injection tests may further spread the contaminant. In some cases, it is best to substitute gas as the fluid, using equipment like the Core Laboratories Portable Probe Permeameter. The permeameter forces gas into an exposed rock face at a fixed initial pressure, then measures how quickly the gas dissipates into the outcrop as the pressure decays.

Borehole Logging

Flow zones may also be delineated through borehole surveys, usually involving temperature differentiation. A Temperature/Fluid Resistivity probe can be used to assess the temperature gradient, identify zones of variable water quality or salinity, and delineate features. An Impeller Flow Meter delineates water flow zones, while at a Heat Pulse Flow Meter can do the same thing but for lower flow rates.

Posted in Geoscience | Tagged , , , , , , , , , , , , , | Leave a comment

Characterization of Porosity & Permeability

Porosity and permeability are closely related, so it is unsurprising that measuring the properties share common techniques that involve determining interconnected pore volume.


Porosity (n) is measured as the ratio of the volume of voids within a material to the total volume of the material. In a laboratory setting, this requires careful measurement of sample volume, and of pore volume. A right cylindrical core sample is extracted using a core drill press, rock saw, and surface grinder. X-ray CT scanners may be used to identify undamaged full-diameter sections for sampling. The dimensions of the sample – length (l) and diameter (d) – are measured using calipers. The volume (V ) of a right cylinder is then a simple calculation: Vtotal = πdl

Next, the sample is dried by baking it in an oven for 24 hours to ensure that no water remains in the pore space.

The pore space is filled with helium gas, which is both nonreactive (thus not altering the sample) and has a small nucleus to ensure the gas can quickly penetrate even small pore spaces provided the pores are interconnected and not isolated. The cylinder is placed in a helium pycnometer: a sample chamber and a reference chamber, both at a known volume and at a fixed temperature. The reference and sample chambers are pressurized with helium gas. Once the sample is inserted, the two chambers are connected, allowing the gas to flow out of the reference chamber into the sample chamber. The ratio of the initial and final pressures is used in conjunction with Boyle’s Law (P1V1 = P2V2) to calculate the solid volume of the sample: Vsolid = V2 = P1V1/P2

Finally, the pore volume is calculated as the difference of the total volume (determined by dimensional measurement) and the solid volume (determined by the helium pycnometer): Vpore = Vtotal − Vsolid

This technique is limited to materials with interconnected pore spaces. Isolated pores are not penetrated by the helium gas, and thus are not measured by this technique.

Alternately, liquid mercury can also be used following a similar process, where the size of infiltrated pores is proportional to the exerted pressure. The measured pore volume has the the same limitations, with the added risk of working with a neurotoxin. In the future, when helium resources have been bled away in party balloons, mercury will be the primary option, and careless graduate students will be the new mad hatters.


Permeability is measured as the hydraulic conductivity (k), which is the the ratio of flow velocity (v) to the hydraulic gradient (i): k = v (3.5) i

Hydraulic conductivity is measured in a laboratory setting by placing a sample under standard temperature conditions, then measuring the rate of discharge of water through a cross-sectional area of the medium. The water must be under laminar flow conditions so that turbulence does not complicate the flow rate. The hydraulic gradient and the cross-sectional area are coordinated to produce unit measurements. A typical example of the laboratory equipment are the Matest Hoek cells to measure the flow of water through a rock specimen of the specified diameter. A similar process can be followed using flowing air instead of water for dissolvable materials

Posted in Geoscience | Tagged , , , , , , , , | Leave a comment

Porosity and Permeability

Porosity is the number of pores per unit of volume in soil. Porosity may decrease through packing or compaction, increase through dilation during shear, or change when fines are transported from one area to another. Materials with higher porosity have a higher storage capacity to hold fluids within the void space. Porosity, in conjunction with the pore fluid properties, directly impacts resistivity.
Permeability is the capacity of a material to conduct a fluid. High permeability materials are less resistant to fluid flow and require less pressure to force the fluid through than lower permeability materials. Permeability is dependent upon the geometry of fissures, pores, and cracks.

Relationship with Geological Materials

Porosity and permeability are highest in coarse-grained poorly-consolidated sedimentary rocks, with decreasing porosity with finer grained and more compacted materials. Igneous rocks typically have low porosity, excepting extrusive tuffs and pumice. Metamorphic rocks usually have intermediate porosity, where compaction and recrystallization infill pore spaces. Weathering increases porosity and permeability, where increasing cracks, fractures, and void spaces all allow for greater pore fluid mobility.

Posted in Geoscience | Tagged , , , , , , , , , | Leave a comment

Geotechnical Properties

Some physical properties of geologic materials are important in geotechnical engineering, but are not useful for geophysical interpretation. These properties are the dry strength, dilatancy plasticity, and toughness of the material. All four properties may be easily quantitatively categorized in the field by handling the materials.

Dry Strength

Dry strength is how strong the material is when it is dry. The dry strength is categorized in the field by the engineer modelling a small ball, adding water if necessary until the material has the consistency of putty, then applying finger pressure. If the ball crumbles with the pressure of handling, it has no dry strength. Categories progress through low, medium, and high, with very high dry strength indicating a material that cannot be broken with the pressure applied by squeezing the sample between a thumb and a hard surface.


Dilatancy is how the volume of a cohesion less soil will expand under loading or shear deformation. The dilatancy of a sample can be qualitatively categorized in the field using basic tools. The field technician will need to mould the specimen into a small ball, adding water until it is soft, then smoothing the surface with a blade or spatula. Then, he or she will shake the ball horizontally, striking the side of one hand against the other, and observing how quickly water appears on the surface of the ball. Then the engineer squeezes the balled sample by closing his or her hand, or by pinching the material, and observing if and how quickly the water disappears back into the ball. The dilatancy is then categorized as none, slow, or rapid depending on how quickly the water appears and disappears when the ball is manipulated.


Plasticity is how far a material may be deformed under constant stress, without cracking or dilatancy. The plastic limit can be determined by rolling the material into a thread, then folding and re-rolling the material until the thread crumbles. After reaching the plastic limit (when the thread crumbles), the field technician kneads the material into a lump, continuing to knead until the material crumbles. The plasticity is qualitatively categorized by how the material behaves with more or less water than the plastic limit, particularly how long it must be rolled to form a thread, then how a lump of the material behaves as it dries out.


Toughness is the ratio of the plasticity index to the flow index. It is tested concurrently to the plasticity test. Qualitatively, it is categorized into low, medium, and high by how much pressure is required to rolling the material into a thread and kneading it into a lump during the plasticity test, and the stiffness of the thread and lump.

Posted in Geoscience | Tagged , , , , , , , , , , , | Leave a comment

Detecting Physical Properties (Fieldwork)

Geophysical field surveys are used to investigate the subsurface. Geophysics may utilize passive techniques, measuring and mapping changes in the ambient field, or as active techniques that measures how the geological environment responds to an input signal. In either instance, the geophysical signal is processed and interpreted to indicate particular physical properties of geological materials. Those physical properties are used to determine a geological interpretation for subsurface materials and structures that would plausibly result in the observed geophysical signals.

The advantage of geophysics surveying is that passive techniques are non-destructive, that measurements are taken close (or at) the area of interest, and that an appropriate survey can provide a wealth of information about the subsurface in a cost-effective manner. The disadvantage of field surveying is that active techniques can be destructive (depending on the type of source providing an active signal), that environmental conditions (weather, access, injury) can increase survey time beyond estimates, and that in-situ properties do not always match properties determined in controlled laboratory settings.

Passive techniques include any survey where sensors measure the ambient field. Examples include gravity and magnetic methods, and some resistivity techniques. Active techniques include any survey where a source provides an active signal, and sensors measure how that signal is altered by the environment. Examples include induced polarization and artificial-source seismic techniques.

Borehole Logging

Boreholes are a circular cross-section made in soil or rock, that is either cased with piping or left bare. A borehole log is the record of the depth, geologic units, sample recovery (if any), water level, and any other significant facts related to the drilling including geophysical data collected through borehole sondes. A sonde is a long, tubular object containing instruments that is attached to an armoured cable, lowered into the drill hole with a pulley and winch system. The sonde is lowered to depth, then data is collected during a slow pull up the hole.

The advantages of a borehole logging with geophysical probes is that we can obtain in-situ measurements close to the target area, can use core or drill chipping to guide geological interpretation of the geophysical data, and, for some types of surveys, obtain measurements for the undisturbed surface away from the borehole. The disadvantages of borehole logging is that drilling is expensive (particularly depending on the location, subsurface characteristics, depth, and if core is preserved), destructive, and may induce fracturing or breach impermeable layers spreading contamination plumes.

A sonde may contain one or more geophysical systems, most commonly sensors to measure resistivity, acoustic velocity, ground penetrating radar, spontaneous potential, neutron-neutron, natural gamma, gamma-gamma, temperature, fluid flow, gravity, or magnetic properties. A survey may consist of in individual hole in isolation, or a cross hole survey with the source in one hole and receivers in another.

Data extracted from geophysical borehole probes is interpreted in conduction with other information from the site. Two additional borehole probes are commonly used in conjunction with the geophysical sondes are calipers (or callipers for those across the ocean), providing a record of borehole diameter, and an optical televiewer, creating an oriented digital image of the borehole wall. Additional information on site conditions, elevation, diameter and angle of hole, material used during drilling or casing, observations on the extracted core or chip pings, and the people involved in the project are all part of standard field logs that can aid geophysical interpretation.

Posted in Geoscience | Tagged , , , , , , , , , | Leave a comment

Characterizing Physical Properties (Labwork)

Measurements are made to determine the physical characteristics of geological materials. This is done by placing a homogeneous sample in specialized equipment designed to measure that particular property under either controlled or in-situ conditions.

Extracting an intact sample is essential for testing of geological materials in controlled conditions.
The material – rock or soil – is obtained using a set standard of care intended to preserve the in- situ properties (such as structure, water content, or density) that are relevant to the particular tests. This is frequently accomplished through some variety of core drilling machine such as that manufactured by The Testwel Instruments Company.

The advantages of laboratory testing is the ability to measure the particular characteristics of the sample uncontaminated by ambient noise. The disadvantage of laboratory testing is that some physical properties change when removed from their in-situ environment, and extracting a sample is destructive. Particular care must be taken when determining the correct sample dimensions for size-dependent mechanical properties, like strength, where the specimen size strongly influences the characteristic.

Examples of physical characteristics that are measured in a laboratory setting, and the machines used to make those measurements Matest Hoek cells used to measure permeability, the Barrington Instruments MS3 for measuring magnetic susceptibility, and triaxial cells for measuring volumetric elasticity to determine the bulk modulus of a material.

Posted in Geoscience | Tagged , , , , , , , , | Leave a comment

How Physical Properties relate to Geological Materials

The physical properties of geological materials are what link geophysical data gathered at the surface to interpretation of subsurface geology. These properties are determined by the microscopic and macroscopic characteristics of the materials and their environments.

Measurements of physical characteristics are taken in controlled laboratory settings, or on site in the field under in-situ conditions. Controlled measurements in laboratory may be complicated by lack of homogeneity in samples, or by changes in physical properties caused by isolating the sample from their environment. On site measurements by their nature incorporate more of the in-situ environmental conditions that would impact a geophysical field survey data, but it is then more difficult to isolate environmental factors that may alter the measurements at one site versus another. As a result, the measured physical properties of a geological material may vary greatly between particular samples, and the environmental conditions of the sample while it is being tested.

Some materials demonstrate heterogeneity, anisotropy, or the physical characteristics inherently dependent upon environmental factors such as saturation. Thus, even in ideal conditions, particular environmental conditions may substantially alter the measured property. Thus, the physical proper- ties of geological materials are more accurately a range of values most commonly associated with a specific material under specific conditions.

In addition to the physical properties themselves demonstrating variability, our ability to measure those properties is also limited. Measurement limitations in the lab or in the field are anything that reduce the ability to quantify a sample, including resolution, sensitivity, precision, bias, repeatability, reproducibility, and uncertainty. Bias in measurements may be quantified by inter-laboratory or round robin testing programs of materials with a known value, but cannot be quantified in materials without accepted reference values. ASTM International1 establishes and maintains a series of standards for consistent practices to take measurements of physical properties in order to increase the repeatability of the tests, and to reduce the impact of variation from human factors in the process.

Posted in Geoscience | Tagged , , , | Leave a comment

Peer Review

The first time I was asked to peer-review an article, I was intimidated. How could I possibly cover all aspects of confirming if research was sound and ready to enter the academic literature?

To start, as with many situations, I called on friends for advice. While I’ve gone on a career path that mixes industry with teaching but doesn’t continue up the academic ladder, members of my various cohorts over the years are now snuggling into post-doc and even professorships, and reviewing papers is a basic part of their jobs. It doesn’t matter that they aren’t all in the same discipline as me — although the evolution of culture and landslides don’t share much overlap, reviewing papers in psychology and geoscience follow the same techniques applied to different fields.

The advice I was given is solid:

1. Why are you being asked to review the article? Are you a specialist in a particular model (for me, DAN-W and DAN3D), a technique, or a theory? Sometimes the editor will tell you directly, other times you need to guess. Evaluate that part particularly strongly, particularly checking if they applied the model correctly, did their math properly, or interpreted a theory consistently.

2. What is it for? A conference paper can reviewed more gently than an article for a prestigious journal.

3. By reading this paper, could you replicate the procedures or processes? Do you have confidence you understand exactly what they did and how they measured it? Is the process sound, or do they use an inappropriate combination (for example, using a container that is known to leach into the sample, or using the wrong model for the type of event)?

4. Would you cite this paper? Why not?

5. Copyediting is a very minor aspect of reviewing, but can be important when correcting the usage of technical vocabulary, especially for papers where the author is not writing in their native language. Be careful not to confuse style preferences with grammatical issues, but feel free to suggest alternate phrasings or correct typos.

Although I finished graduate school years ago, a good advisor-relationship can continue even after leaving academia. My advisor and I have a clear overlap in our academic interests, so any paper I am asked to review is one he will eventually read to stay current on the literature anyway. This means asking him to read it early and meeting with me to chat about it isn’t a big imposition on his time, so that’s exactly what I did. The biggest message he had for me was to relax and not stress about giving a flawless review. I wasn’t the only reviewer, and considering that peer review is debatably effective anyway, the entire academic body of landslide studies will not crumble if I make a mistake.

How do you go about peer reviewing articles?

Posted in Practice of Science | Tagged | 1 Comment

Physical Properties of Geologic Materials

As Sedimentation Saturday was a lovely way of teaching myself more sedimentation and stratigraphy than I had previously known, for 2014, I’m taking the same route to look at the most fundamental concept in geophysics: the physical properties of geological materials. Being able to invert measurements of physical properties back to the distribution and materials most likely to produce those measurements is the key characteristic of geophysics, making it a science instead of the voodoo-magic some other geo-disciplines occasionally accuse geophysics of being.

Each month will cover a different physical physical property. The weekly updates will be on what that physical property actually is, how it relates to geological materials, and how it is measured in isolation or in situ. I’m leaving out the references; for further reading I highly recommend the ATSM International standards, and Field Geophysics by Milsom (any edition).

Posted in Geoscience | Tagged , , , , | Leave a comment